Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889906.1_cds_XP_016444602.1_39645
CDS Infomation

[gene=LOC107769862] [db_xref=GeneID:107769862] [protein=pentatricopeptide repeat-containing protein At1g31430-like] [protein_id=XP_016444602.1] [location=21414..23291] [gbkey=CDS]
Sequence

ATGTGTTCAATAAGGTTAATTTCTAGTCGTTCTATTAATAAACTTACTAGCTTCTCAACT
CTCATCAATTGTTCACCAAAAGAAACACTTGACACTAAAACATGCATTGAACTTCTAAAG
ACATGCAAATCCATTACACAGCTCAAACAAATCCATGCCCAAGTCATCATCCTCAATTTC
CACAAACGCATTGGCATTTTACACAAGCTTTTAGCTTTTACAACTGATACACTCCAAGGA
GGAGACTTTAATTACGCCAAGAAAATCTTCACTTATTGTCACAGCCGTACATTGTTCATG
TACAATGTAATGATTAAAGGATATGTGAAAAATGGTCAATTTAAACAACCCCTTTTCTTG
TTTGATGAATTAAGAATAGGTGGCTTGTGTCCTGATAGTTTTACTTATCCATTTGTGTTT
AAAGCTATTGGTGAGTTGAAAATGGTTAAGGAAGGTGAAAAGATTCATGGCTATGTGTTG
AAATCCGGTGTTTGGTTTGATAACTATGTTGGTAATTCTGTTATGGATATGTATGGTCTG
TTTGGTTGTGTGACGAGCTTGAACAAAGTGTTTGATGAAATGACTCACAGAGATTCGGTC
GCATGGAATATATTGATTTCTGGATTTGTGAGATGTGGTAGGTATGGGGATGCTGTTGGA
GTTTACATGAAGATGCGGGAGAAAAGTGGTGTTAAGCCTGACGAAGCGACAATTGTGAGT
ACTTTGTCAGCTTGCACTGCATTGAAAAGCTTGGAACTTGGTAAAGAAATTCATCGATAC
GTTGTTGAAGAGCTTGGGTTTAGCGTTATTATTGGGAATGCATTAGTGGACATGTATTCT
AAGTGTGGATTCTTGATGGTGGCTAGGCAGATTTTTGATGATATGCCAACGAAAAATGTT
ATATGTTGGACTAGTATGGTTTCTGGGTATGTTAATCGCGGTCAATTGGATGAAGCTGGA
AAACTTTTTGAGAGGAGTCCGGTAAGGGATCTAGTTCTGTGGACAACTATGATTAATGGG
TATGTGCAATTCAACCGTGTTGATGATGCAATGAATATGTTTCGTACGATGCAAATGCAA
AGGATTAAACCTGATAAATACACACTGGTTGCTCTTCTCACTGGTTGTGCTCAGATAGGA
GCCTTTGAACAAGGGGAATGGATTCGTGATTACATGAAGGAAAACAAAATAGCTATTACT
GCAGTTGTTGGTACTGCCCTTATAGAGATGTATGCAAAGTGTGGTTGCATAGAAAAATCG
ATGGAAATATTTGATGGATTAAAAGAGAAAGATACTGCATCATGGACTTCAATTATTTGT
GCGTTAGCCATGAGCGGGAACACGAAGAAAGCACTGGAACTGTTCTCACAAATGGAACAA
GGTGGATTTTGCCCCGATGATATCACGTTTATCGGAGTGTTGAGTGCATGCAGCCATGGG
GGCTTGGTAGAGGAAGGCCGCAGGTATTTCCACTCAATGAGTAGGATTTATGGGATTCAG
CCAAAGTTAGAACATTATGGTTGTCTGATTGACCTACTTGGTCGTGCTGGGCTCTTAAGA
GAAGCTGAAGAAACGATATCTATGATACCGAAAAAAGACAATGAGATTATAATTCCAATA
TATGGGGCTTTGCTCAGTGCCTGCAGAATTTACGGCAGTGTTGATGTCGGTGAACGTGTG
GCTAAACTGCTTATGGAGATTGAATCTTATGATTCTAGCACTCATACGCTTCTGGCAAAC
ACCTATGCATCTGCTGGCAGATGGGAAGATGTATCAAAGGTCAGAGGAACTATGCGAGAT
TTAGGTGTTAAGAAGTCACCTGGGTGCAGTTCAATTGACGTCAATGCCAATGTGTATGAG
TTCATCGTTGGGCATTAA

Peptide Sequence

PEP ID

XP_016444602.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Nicotiana tabacum]
Sequence

MCSIRLISSRSINKLTSFSTLINCSPKETLDTKTCIELLKTCKSITQLKQIHAQVIILNF
HKRIGILHKLLAFTTDTLQGGDFNYAKKIFTYCHSRTLFMYNVMIKGYVKNGQFKQPLFL
FDELRIGGLCPDSFTYPFVFKAIGELKMVKEGEKIHGYVLKSGVWFDNYVGNSVMDMYGL
FGCVTSLNKVFDEMTHRDSVAWNILISGFVRCGRYGDAVGVYMKMREKSGVKPDEATIVS
TLSACTALKSLELGKEIHRYVVEELGFSVIIGNALVDMYSKCGFLMVARQIFDDMPTKNV
ICWTSMVSGYVNRGQLDEAGKLFERSPVRDLVLWTTMINGYVQFNRVDDAMNMFRTMQMQ
RIKPDKYTLVALLTGCAQIGAFEQGEWIRDYMKENKIAITAVVGTALIEMYAKCGCIEKS
MEIFDGLKEKDTASWTSIICALAMSGNTKKALELFSQMEQGGFCPDDITFIGVLSACSHG
GLVEEGRRYFHSMSRIYGIQPKLEHYGCLIDLLGRAGLLREAEETISMIPKKDNEIIIPI
YGALLSACRIYGSVDVGERVAKLLMEIESYDSSTHTLLANTYASAGRWEDVSKVRGTMRD
LGVKKSPGCSSIDVNANVYEFIVGH

Transcript Sequence

Gene sequence data has not been registered.